The site of the Media Sphera Publishers contains materials intended solely for healthcare professionals.
By closing this message, you confirm that you are a certified medical professional or a student of a medical educational institution.

Polyakova V.I.

Kurchatov Complex of Medical Primatology of NRC «Kurchatov Institute»

Krivonos D.V.

Research Institute for Systems Biology and Medicine;
Moscow Institute of Physics and Technology

Klimina K.M.

Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine

Veselovsky V.A.

Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine

Orlov A.V.

Research Institute for Systems Biology and Medicine;
Institute of Pharmacy — I. M. Sechenov First Moscow State Medical University (Sechenov University)

Fedorov D.E.

Research Institute for Systems Biology and Medicine

Korneenko E.V.

Research Institute for Systems Biology and Medicine

Penkin L.N.

Research Institute for Systems Biology and Medicine

Pavlenko A.V.

Research Institute for Systems Biology and Medicine

Ilina E.N.

Research Institute for Systems Biology and Medicine

Arshba I.M.

Kurchatov Complex of Medical Primatology of NRC «Kurchatov Institute»

Age-related features of the gut microbiota composition of Rhesus monkeys kept in captivity

Authors:

Polyakova V.I., Krivonos D.V., Klimina K.M., Veselovsky V.A., Orlov A.V., Fedorov D.E., Korneenko E.V., Penkin L.N., Pavlenko A.V., Ilina E.N., Arshba I.M.

More about the authors

Read: 1396 times


To cite this article:

Polyakova VI, Krivonos DV, Klimina KM, et al. . Age-related features of the gut microbiota composition of Rhesus monkeys kept in captivity. Molecular Genetics, Microbiology and Virology. 2024;42(3):22‑28. (In Russ.)
https://doi.org/10.17116/molgen20244203122

Recommended articles:
Short-chain fatty acid profile in patients unde­rgoing maintenance hemo­dialysis. Russian Journal of Evidence-Based Gastroenterology. 2025;(1):47-54
Gut—brain: inte­ractions in health and pathology. Russian Journal of Preventive Medi­cine. 2025;(11):106-112

References:

  1. Gupta A, Saha S, Khanna S. Therapies to modulate gut microbiota: Past, present and future. World J Gastroenterol. 2020 Feb 28;26(8):777-788. PMID: 32148376; PMCID: PMC7052537. https://doi.org/10.3748/wjg.v26.i8.777
  2. Yan Y, Wang J, Qiu S, Duan Y, Si W. The Lumenal Microbiota Varies Biogeographically in the Gastrointestinal Tract of Rhesus Macaques. MicrobiolSpectr. 2022 Jun 29;10(3):e0034322. Epub 2022 May 2. PMID: 35499338; PMCID: PMC9241614. https://doi.org/10.1128/spectrum.00343-22
  3. Adriansjach J, Baum ST, Lefkowitz EJ, Van Der Pol WJ, Buford TW, Colman RJ. Age-Related Differences in the Gut Microbiome of Rhesus Macaques. J GerontolA Biol Sci Med Sci. 2020 Jun 18;75(7):1293-1298. PMID: 32052009; PMCID: PMC7302168. https://doi.org/10.1093/gerona/glaa048
  4. Rhesus Macaque Genome Sequencing and Analysis Consortium; Gibbs RA, Rogers J, Katze MG, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science. 2007 Apr 13;316(5822):222-34 PMID: 17431167.4.  https://doi.org/10.1126/science.1139247
  5. Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, et al. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Biol Direct. 2014 Oct 14;9(1):20 PMID: 25319552; PMCID: PMC4214606. https://doi.org/10.1186/1745-6150-9-20
  6. Colman RJ. Non-human primates as a model for aging. BiochimBiophys Acta Mol Basis Dis. 2018 Sep;1864(9 Pt A):2733-2741 Epub 2017 Jul 17. PMID: 28729086; PMCID: PMC5772001. https://doi.org/10.1016/j.bbadis.2017.07.008
  7. Harding JD. Nonhuman Primates and Translational Research: Progress, Opportunities, and Challenges. ILAR J. 2017 Dec 1;58(2):141-150. PMID: 29253273; PMCID: PMC5886318. https://doi.org/10.1093/ilar/ilx033
  8. Yasuda K, Oh K, Ren B, Tickle TL, Franzosa EA, Wachtman LM, et al. Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque. Cell Host Microbe. 2015 Mar 11;17(3):385-391. Epub 2015 Feb 26. PMID: 25732063; PMCID: PMC4369771. https://doi.org/10.1016/j.chom.2015.01.015
  9. Li Y, Chen T, Liang J, Li Y, Huang Z. Seasonal variation in the gut microbiota of rhesus macaques inhabiting limestone forests of southwest Guangxi, China. Arch Microbiol 203, 787—798 (2021). https://doi.org/10.1007/s00203-020-02069-6
  10. Chen T, Li Y, Liang J, Li Y, Huang Z. Gut microbiota of provisioned and wild rhesus macaques (Macaca mulatta) living in a limestone forest in southwest Guangxi, China. Microbiologyopen. 2020 Mar;9(3):e981. Epub 2019 Dec 26. PMID: 31880067; PMCID: PMC7066464. https://doi.org/10.1002/mbo3.981
  11. Amato KR, Leigh SR, Kent A, Mackie RI, Yeoman CJ, Stumpf RM, et al. The gut microbiota appears to compensate for seasonal diet variation in the wild black howler monkey (Alouatta pigra). MicrobEcol. 2015 Feb;69(2):434-43. Epub 2014 Dec 19. PMID: 25524570. https://doi.org/10.1007/s00248-014-0554-7
  12. Gomez A, Petrzelkova K, Yeoman CJ, Vlckova K, Mrázek J, Koppova I, et al. Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology. Mol Ecol. 2015 May;24(10):2551-65. PMID: 25846719. https://doi.org/10.1111/mec.13181
  13. Kohl KD, Varner J, Wilkening JL, Dearing MD. Gut microbial communities of American pikas (Ochotona princeps): Evidence for phylosymbiosis and adaptations to novel diets. J Anim Ecol. 2018 Mar;87(2):323-330.Epub 2017 Jun 26. PMID: 28502120. https://doi.org/10.1111/1365-2656.12692
  14. Rothschild D, Weissbrod O, Barkan E, Kurilshikov A, Korem T, Zeevi D, et al. Environment dominates over host genetics in shaping human gut microbiota. Nature. 2018 Mar 8;555(7695):210-215. Epub 2018 Feb 28. PMID: 29489753. https://doi.org/10.1038/nature25973
  15. Vangay P, Johnson AJ, Ward TL, Al-Ghalith GA, Shields-Cutler RR, Hillmann BM, et al. US Immigration Westernizes the Human Gut Microbiome. Cell. 2018 Nov 1;175(4):962-972.e10. PMID: 30388453; PMCID: PMC6498444. https://doi.org/10.1016/j.cell.2018.10.029
  16. Zhao J, Yao Y, Li D, Xu H, Wu J, Wen A, et al. Characterization of the Gut Microbiota in Six Geographical Populations of Chinese Rhesus Macaques (Macaca mulatta), Implying an Adaptation to High-Altitude Environment. MicrobEcol. 2018 Aug;76(2):565-577. Epub 2018 Jan 25. PMID: 29372281. https://doi.org/10.1007/s00248-018-1146-8
  17. McKenzie VJ, Song SJ, Delsuc F, Prest TL, Oliverio AM, Korpita TM, et al. The Effects of Captivity on the Mammalian Gut Microbiome. Integr Comp Biol. 2017 Oct 1;57(4):690-704.PMID: 28985326; PMCID: PMC5978021. https://doi.org/10.1093/icb/icx090
  18. Nelson TM, Rogers TL, Carlini AR, Brown MV. Diet and phylogeny shape the gut microbiota of Antarctic seals: a comparison of wild and captive animals. EnvironMicrobiol. 2013 Apr;15(4):1132-45. Epub 2012 Nov 12. PMID: 23145888. https://doi.org/10.1111/1462-2920.12022
  19. Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014 Aug 1;30(15):2114-20. Epub 2014 Apr 1. PMID: 24695404; PMCID: PMC4103590. https://doi.org/10.1093/bioinformatics/btu170
  20. Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. Journal. 2011; 17(1): 10-12. 
  21. Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP. DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods. 2016 Jul;13(7):581-3. Epub 2016 May 23. PMID: 27214047; PMCID: PMC4927377. https://doi.org/10.1038/nmeth.3869
  22. Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41(Database issue):D590-6. Epub 2012 Nov 28. PMID: 23193283; PMCID: PMC3531112. https://doi.org/10.1093/nar/gks1219
  23. Davis NM, Proctor DM, Holmes SP, Relman DA, Callahan BJ. Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. Microbiome. 2018 Dec 17;6(1):226. PMID: 30558668; PMCID: PMC6298009. https://doi.org/10.1186/s40168-018-0605-2
  24. Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. GenomeBiol. 2014;15(12):550. PMID: 25516281; PMCID: PMC4302049. https://doi.org/10.1186/s13059-014-0550-8
  25. Zhu LB, Zhang YC, Huang HH, Lin J. Prospects for clinical applications of butyrate-producing bacteria. World J Clin Pediatr. 2021 Sep 9;10(5):84-92. PMID: 34616650; PMCID: PMC8465514. https://doi.org/10.5409/wjcp.v10.i5.84
  26. Benítez-Páez A, Gómez Del Pugar EM, López-Almela I, Moya-Pérez Á, Codoñer-Franch P, Sanz Y. Depletion of Blautia Species in the Microbiota of Obese Children Relates to Intestinal Inflammation and Metabolic Phenotype Worsening. mSystems. 2020 Mar 24;5(2):e00857-19. PMID: 32209719; PMCID: PMC7093825. https://doi.org/10.1128/mSystems.00857-19
  27. Sayols-Baixeras S, Dekkers KF, Baldanzi G, Jönsson D, Hammar U, Lin YT, et al. Streptococcus Species Abundance in the Gut Is Linked to Subclinical Coronary Atherosclerosis in 8973 Participants From the SCAPIS Cohort. Circulation. 2023 Aug 8;148(6):459-472. Epub 2023 Jul 12. PMID: 37435755; PMCID: PMC10399955. https://doi.org/10.1161/CIRCULATIONAHA.123.063914
  28. Lobionda S, Sittipo P, Kwon HY, Lee YK. The Role of Gut Microbiota in Intestinal Inflammation with Respect to Diet and Extrinsic Stressors. Microorganisms. 2019 Aug 19;7(8):271. PMID: 31430948; PMCID: PMC6722800. https://doi.org/10.3390/microorganisms7080271
  29. Integrative HMP (iHMP) Research Network Consortium. The Integrative Human Microbiome Project. Nature. 2019;569(7758):641-8.  https://doi.org/10.1038/s41586-019-1238-8

Email Confirmation

An email was sent to test@gmail.com with a confirmation link. Follow the link from the letter to complete the registration on the site.

Email Confirmation

We use cооkies to improve the performance of the site. By staying on our site, you agree to the terms of use of cооkies. To view our Privacy and Cookie Policy, please. click here.