Comparative characteristics of communities of microorganisms in the surface waters of bays in the coastal waters of the Sea of Japan exposed to anthropogenic impact

Gaev K.G.; Manucharova N.A.; Ponomareva A.L.; Rogov A.G.; Toshakov S.V.; Krylova A.S.; Shematorova E.K.; Shakirov R.B.; Petrova E.A.; Eskova A.I.; Varakin I.M.; Vasilov R.G.

doi:https://doi.org/10.17116/molgen20254303136

Gaev K.G.

National Research Centre “Kurchatov Institute”

Manucharova N.A.

Lomonosov Moscow State University

ORCID: 0000-0002-7304-7753

Ponomareva A.L.

V.I.Il`ichev Pacific Oceanological Institute, Far Eastern Branch, Russian Academy of Sciences

ORCID: 0000-0002-4382-9156

Rogov A.G.

National Research Centre “Kurchatov Institute”

ORCID: 0000-0003-2286-4961

Toshakov S.V.

National Research Centre “Kurchatov Institute”

Krylova A.S.

National Research Centre “Kurchatov Institute”

ORCID: 0000-0001-9962-4267

Shematorova E.K.

National Research Centre “Kurchatov Institute”

Shakirov R.B.

V.I.Il`ichev Pacific Oceanological Institute, Far Eastern Branch, Russian Academy of Sciences

ORCID: 0000-0003-1202-0351

Petrova E.A.

V.I.Il`ichev Pacific Oceanological Institute, Far Eastern Branch, Russian Academy of Sciences

ORCID: 0009-0003-8069-5710

Eskova A.I.

V.I.Il`ichev Pacific Oceanological Institute, Far Eastern Branch, Russian Academy of Sciences

ORCID: 0000-0002-3391-0057

Varakin I.M.

Lomonosov Moscow State University

Vasilov R.G.

National Research Centre “Kurchatov Institute”

ORCID: 0000-0002-3247-3502

Comparative characteristics of communities of microorganisms in the surface waters of bays in the coastal waters of the Sea of Japan exposed to anthropogenic impact

Authors:

Gaev K.G., Manucharova N.A., Ponomareva A.L., Rogov A.G., Toshakov S.V., Krylova A.S., Shematorova E.K., Shakirov R.B., Petrova E.A., Eskova A.I., Varakin I.M., Vasilov R.G.

More about the authors

Journal: Molecular Genetics, Microbiology and Virology. 2025;43(3): 36‑46

DOI: 10.17116/molgen20254303136

Read: 222 times

Contact the author

Table of contents

To cite this article:

Gaev KG, Manucharova NA, Ponomareva AL, et al. . Comparative characteristics of communities of microorganisms in the surface waters of bays in the coastal waters of the Sea of Japan exposed to anthropogenic impact. Molecular Genetics, Microbiology and Virology. 2025;43(3):36‑46. (In Russ.)
https://doi.org/10.17116/molgen20254303136

Подписка 2026 Молекулярная генетика, микробиология и вирусология (Molecular Genetics, Microbiology and Virology)

Использование инфографики авторами научных работ

Recommended articles:

Gut microbiota: role in human health and potential for personalized medicine. Russian Journal of Evidence-Based Gastroenterology. 2024;(4):81-88

Stratification of the risk of malignization of intraductal papillary mucinous neoplasms of the pancreas. Pirogov Russian Journal of Surgery. 2024;(12):99-104

Nutrition correction in the complex therapy and rehabilitation of the posttraumatic stress disorder. Russian Journal of Preventive Medicine. 2025;(2):114-119

Factors supporting chronic inflammation in mental illness. S.S. Korsakov Journal of Neurology and Psychiatry. 2025;(8):7-15

Abstract:

The study of microbial communities is of primary importance in assessing the ecological state of the atmosphere, hydrosphere and biosphere as a whole. Of greatest interest are communities located near places of human activity: cities, factories and seaports. The study of microbial communities in the bays of Primorsky Territory are currently insufficiently studied, as the objects of the study were mainly focused on the bays and gulfs located nearest to Vladivostok, while the water areas located to the north along the seacoast were studied insufficiently or not at all. This study presents new data on the microbiota composition of ten bays and creeks of Primorsky Territory. The main dominants, environmental factors affecting microbial populations, as well as their functional features which not only impact the processes of formation of bacterial communities, but also participate in providing the functioning of ecosystems as a whole were identified. Expeditionary research on the Pilgrim cruise ship is the first implemented activity of the ‘Road Map’ (2024—2028) initiated by NRC “Kurchatov Institute” and TOI FEB RAS. The results obtained are promising for studies in accordance with the Decree of the President of the Russian Federation No. 818 dated 02.11.2023 “On the development of nature-like technologies in the Russian Federation”.

Keywords:

microbiome

Sea of Japan

expeditionary research

DNA sequencing

bioinformatics analysis

metagenomics

Authors:

Gaev K.G.

National Research Centre “Kurchatov Institute”

Manucharova N.A.

Lomonosov Moscow State University

ORCID: 0000-0002-7304-7753

Ponomareva A.L.

V.I.Il`ichev Pacific Oceanological Institute, Far Eastern Branch, Russian Academy of Sciences

ORCID: 0000-0002-4382-9156

Rogov A.G.

National Research Centre “Kurchatov Institute”

ORCID: 0000-0003-2286-4961

Toshakov S.V.

National Research Centre “Kurchatov Institute”

Krylova A.S.

National Research Centre “Kurchatov Institute”

ORCID: 0000-0001-9962-4267

Shematorova E.K.

National Research Centre “Kurchatov Institute”

Shakirov R.B.

V.I.Il`ichev Pacific Oceanological Institute, Far Eastern Branch, Russian Academy of Sciences

ORCID: 0000-0003-1202-0351

Petrova E.A.

V.I.Il`ichev Pacific Oceanological Institute, Far Eastern Branch, Russian Academy of Sciences

ORCID: 0009-0003-8069-5710

Eskova A.I.

V.I.Il`ichev Pacific Oceanological Institute, Far Eastern Branch, Russian Academy of Sciences

ORCID: 0000-0002-3391-0057

Varakin I.M.

Lomonosov Moscow State University

Vasilov R.G.

National Research Centre “Kurchatov Institute”

ORCID: 0000-0002-3247-3502

Received:

31.03.2025

Accepted:

06.05.2025

Close metadata

References:

James CC, Allen AE, Lampe RH, Rabines A, Barton AD. Endemic, cosmopolitan, and generalist taxa and their habitat affinities within a coastal marine microbiome. Scientific Reports. 2024;14(1). https://doi.org/10.1038/s41598-024-69991-3
Gorbatenko LV. The current state of the environment of the Pacific Russia coastal zone. Vestnik DVO RAN. 2017;4:50-60.
Badmaev OV. Phenol content in the marine environments of the coastal waters in Peter the Great Bay, Japan Sea. Izvestiya TINRO. 2024;204(3):609-628. https://doi.org/10.26428/1606-9919-2024-204-609-628
Boychenko TV. Experience of application of microbial indication methods in evaluating the quality of the environment of chronically polluted marine aquatories. Vestnik of North-Eastern Federal University. 2019;2(70):5-13.
Volovik E.V. Mikroorganizmy — indikatory zagryazneniya morej. Materialy VII Mezhdunarodnoj studencheskoj nauchnoj konferencii «Studencheskij nauchnyj forum». Accessed February 18, 2025. (In Russ.). https://scienceforum.ru/2015/article/2015010099
Репина (Смирнова) М.А. Автореф. «Нефтеуглеводородокисляющие микроорганизмы прибрежных вод юга острова Сахалин» Дисс. к.б.н. 03.00.16. Сахалинский научно-исследовательский институт рыбного хозяйства и океанографии, Дальневосточный государственный университет МОН РФ. Владивосток, 2009. 22 с.
Bogatyrenko EA, Kim AV, Polonik NS, Dunkai TI, Ponomareva AL, Dashkov DV. Psychrotrophic hydrocarbon-oxidizing bacteria isolated from bottom sediments of Peter the Great bay, sea of Japan. Oceanology. 2022;62(3):439-450. Accessed February 18, 2025. https://elibrary.ru/item.asp?id=48412491
Biologi issleduyut, kak bakterii Yaponskogo morya spravlyayutsya s zagryazneniem nefteproduktami. Accessed February 18, 2025. (In Russ.). https://rscf.ru/news/presidential-program/biologi-issleduyut-kak-bakterii-yaponskogo-morya-spravlyayutsya-s-zagryazneniem-nefteproduktami/?ysclid=m6qebak52418959877
Rostov ID, Rudyh NI, Luchin VA, Yurasov GI, Zhabin IA, Tihomirova EA. et al. Prirodopol’zovanie, sostoyanie i tendencii izmenenij morskoj sredy pribrezhnyh i sopredel’nyh rajonov dal’nevostochnyh morej Rossii. Vladivostok: tihookeanskij okeanologicheskij institut im. V.I. Il’icheva DVO RAN. 2013;13. Accessed February 18, 2025. (In Russ.). https://elibrary.ru/item.asp?id=26061366
Resursy poverhnostnyh vod SSSR: Gidrologicheskaya izuchennost’. Pod red. YuE Yablokova. L.: Gidrometeoizdat; 1970;18(2). (In Russ.).]
Lociya №1401 severo-zapadnogo berega Yaponskogo morya ot reki Tumannaya do mysa Belkina. — SPb.: GUNiO MO RF; 2005. (In Russ.).]
Podorvanova NF, Ivashinnikova TS, Petrenko VS, Homichuk LS. Osnovnye cherty gidrohimii zaliva Petra Velikogo (Yaponskoe more). Pod red. NK Hristoforovoj, VG Yarichina. Vladivostok: DVO AN SSSR; 1989. (In Russ.).
Zhabin IA, Gramm-Osipova OL, Yurasov GI. Vetrovoj apvelling u severo-zapadnogo poberezh’ya Yaponskogo morya. Meteorologiya i gidrologiya. 1993;10: 82-86. Accessed February 18, 2025. (In Russ.). https://elibrary.ru/ubobip
Galysheva YuA. Biological consequences of organic pollution for marine coastal ecosystems in the Russian part of Japan Sea. Izvestiya TINRO. 2009;158:209-227. Accessed February 18, 2025. https://cyberleninka.ru/article/n/biologicheskie-posledstviya-organicheskogo-zagryazneniya-pribrezhnyh-morskih-ekosistem-rossiyskoy-chasti-yaponskogo-morya
Oceanographic conditions in the Amur Bay (Japan Sea) in winter of 2005. Izvestiya TINRO. 2005;143:203-218. Accessed February 18, 2025. https://cyberleninka.ru/article/n/okeanologicheskie-usloviya-v-amurskom-zalive-yaponskoe-more-zimoy-2005-g
Biryulin GM, Biryulina MG, Mikulich LV, Yakunin LP. Letnie modifikacii vod zaliva Petra Velikogo. Tr. DVNIGMI. 1970;30:286-299. (In Russ.).
Nekotorye regional’nye posledstviya antropogennogo vozdejstviya na morskuyu sredu. Pod red. AV Tkalina. Tr. DVNIGMI. L.: Gidrometeoizdat. 1990;144:108. (In Russ.).
Yarichin VG. Sostoyanie izuchennosti cirkulyacii vod Yaponskogo morya. Tr. DVNIGMI. 1980;80:46-61. (In Russ.).
Kim AV. Biologicheskaya harakteristika morskih psevdomonad, vydelennyh iz rajonov s raznoj stepen’yu antropogennoj nazgruzki. Materialy VI Mezhdunarodnoj studencheskoj nauchnoj konferencii «Studencheskij nauchnyj forum». (In Russ.).
Balabanova L, Bakholdina S, Buinovskaya N, Noskova Yu, Kolpakova O, Vlasova V. et al. LPS-Dephosphorylating Cobetia amphilecti Alkaline Phosphatase of PhoA Family Divergent from the Multiple Homologues of Cobetia spp. Microorganisms. 2024;12(3):631. https://doi.org/10.3390/microorganisms12030631
Schultz-Johansen M, Bech PK, Hennessy RC, Glaring MA, Barbeyron T, Czjzek M, & Stougaard P. A novel enzyme portfolio for red algal polysaccharide degradation in the marine bacterium Paraglaciecola hydrolytica S66T encoded in a sizeable polysaccharide utilization locus. Frontiers in Microbiology. 2018;9:15. https://doi.org/10.3389/fmicb.2018.00839
Lindell D. The Genus Prochlorococcus, Phylum Cyanobacteria. In: Rosenberg E. et al. (eds.), The Prokaryotes — Other Major Lineages of Bacteria and the Archaea. Springer-Verlag Berlin Heidelberg. 2014:829-845. https://doi.org/10.1007/978-3-642-38954-2_125
Korshunova TYu, Kuzina EV, Sharipov DA, Rafikova GF. Bacteria of the genera Acinetobacter and ochrobactrum in the processes of bioremediation of oil-contaminated objects (review). Theoretical and Applied Ecology. 2021;(3):13-20/ https://doi.org/10.25750/1995-4301-2021-3-013-020